Danida Development Research · Kenya–Denmark · 2025–2029

Groundwater Equity & Management in Arid Regions

An international research collaboration combining cutting-edge geoscience with socio-economic analysis — securing safe, equitable water for Turkana County's communities on the frontlines of climate change.

Population Impact
13M+
Kenyans affected by fluoride & salinity hazards in drinking water sources
Turkana County
50%
Population lacking access to safe potable water — rural communities hardest hit
WHO Exceedance
Maximum recorded fluoride concentration versus WHO drinking water guideline of 1.5 mg/L
Why This Matters

A crisis at the intersection of
science, equity & climate

Kenyans at risk from unsafe groundwater

Kenya hosts the most people affected by water scarcity over four decades, with Turkana County at the epicentre — where fluoride reaches nearly four times the WHO guideline, tasteless and odourless, consumed unknowingly for years causing irreversible skeletal fluorosis.

The Invisible Threat: Fluoride

Groundwater F⁻ ranges 0.15–5.9 mg/L in Turkana County. Unlike salinity, fluoride has no taste — communities may drink contaminated water for decades without knowing. Understanding variability drivers is the first step to prevention and safe water access.

Rising Salinity

Saline intrusion, evaporation, and geothermal mixing threaten alluvial aquifers — and high salinity directly triggers fluoride release from sediments, creating dangerous compounding hazards that demand integrated management.

Climate Amplification

Droughts, shifting land use, and excessive groundwater abstraction are projected to further elevate fluoride and salinity concentrations — demanding predictive models to guide climate-resilient resource management for decades ahead.

A Justice Crisis

Water collection falls disproportionately on women and children. Rural communities rely on unimproved sources. GEM treats this as both a science and justice problem — inseparable from each other, requiring integrated solutions.

The GEM Project

Interdisciplinary science for
transformational impact

GEM unites world-leading Danish geoscientists with Kenyan researchers, government partners, and a newly established local university to produce knowledge that genuinely changes water governance — in Turkana County and arid regions globally.

Understand the Drivers

Map environmental variables governing groundwater fluoride and salinity patterns across Turkana County using machine learning and geophysical data.

Resolve the Processes

Isolate hydrogeochemical reactions controlling fluoride mobilisation in alluvial aquifers under groundwater–surface water exchange.

Predict the Future

Build next-generation reactive transport models to forecast climate change impacts on groundwater quality over coming decades.

Assess Equity & Welfare

Quantify distributional consequences of water scarcity, ensuring solutions are socially just — not only technically feasible.

Lake Turkana Lodwar Sample site High F⁻ site N TURKANA COUNTY · KENYA
Research Programme

Five interconnected
work packages

WP1 · Environmental Factors

Environmental Variables Governing Groundwater Quality

Building the empirical and modelling foundation for the entire GEM project

Compiles a cutting-edge database for Turkana County integrating groundwater chemistry, geophysics, land use, climate variables, and remote sensing data — then applies machine learning to generate high-resolution prediction maps.

~150 sampling points, TEM profiles, national datasets, and global remote sensing layers

Machine learning feature importance for geological heterogeneity impact on water quality

High-resolution fluoride, salinity, and availability prediction maps across Turkana County

Explainable AI outputs with quantified uncertainty for government decision-making

WP2 · Processes

Hydrogeochemical Processes in Alluvial Aquifers

Resolving fluoride and salinity dynamics under groundwater–surface water exchange

Two research transects of multi-level monitoring wells — one in urban Lodwar, one near Lake Turkana — enable direct measurement of aquifer dynamics. RCGW leads all chemical sample analysis.

Transect monitoring wells; core sediments for fluoride adsorption experiments

Groundwater–surface water exchange models using MODFLOW6 and PEST

PHREEQC-3 speciation and surface complexation modelling

2D reactive transport models integrating flow and geochemistry

WP3 · Climate Futures

Predicting Net Effects of Climate Change

Translating IPCC climate scenarios into groundwater quality forecasts

Uses WP1 and WP2 models to forecast how future climate change, land use shifts, and population growth will affect groundwater quality — the foundation for climate-resilient resource management.

CMIP6 climate scenario identification and future groundwater demand estimation

3D conceptual hydrological baseline model of the Lodwar area

Worst-to-best IPCC projections across 1D and 2D reactive transport models

Net impact quantification: climate change versus other stressors

WP4 · Socio-Economics

Socio-Economic Impacts & Water Equity

Bridging geoscience with human welfare, justice, and community resilience

Assesses how water quality and scarcity affect communities in Turkana County — examining gender-based access patterns, health perceptions, willingness-to-pay for clean water, and distributional consequences.

Household baseline surveys on water access, time-use by gender, and seasonal variability

Community knowledge assessment: water quality, fluoride, salinity, and health links

Choice experiments quantifying willingness-to-pay for treated potable water

Population density maps combined with WP1 outputs for safe groundwater access estimates

WP5 · Capacity & Dissemination

Capacity Strengthening & Knowledge Dissemination

RCGW leads this work package — coordinating training, stakeholder engagement, and community outreach

Ensures GEM's impact extends far beyond the research team. Three PhD students and one postdoctoral researcher trained under the project, alongside master's students at UoN, TUC, and UCPH.

Three PhD students and one postdoc; research visits to Denmark for Kenyan researchers

Training courses for up to 20 participants prioritising early career researchers

Annual stakeholder meetings: scientists, county government, Water Resources Authority

Community lectures at Turkana County schools and villages; GEM portal on RCGW website

WP1 · Environmental Factors · GEUS Lead · 2025–2029

Environmental Variables Governing Groundwater Quality

Building the empirical and modelling foundation for the entire GEM project

Compiles a cutting-edge database for Turkana County integrating groundwater chemistry, geophysics, land use, climate variables, and remote sensing data — then applies machine learning to generate high-resolution prediction maps.

Comprehensive database integrating ~150 sampling points, TEM profiles, national datasets, and global remote sensing layers

Machine learning feature importance analysis assessing geological heterogeneity impact on water quality

High-resolution prediction maps of fluoride, salinity, and groundwater availability across Turkana County

Explainable AI outputs with quantified uncertainty to guide stakeholder and government decision-making

WP2 · Processes · University of Nairobi Lead · 2025–2029

Hydrogeochemical Processes in Alluvial Aquifers

Resolving fluoride and salinity dynamics under groundwater–surface water exchange

Two research transects of multi-level monitoring wells — one in urban Lodwar, one near Lake Turkana — enable direct measurement of aquifer dynamics. RCGW leads all chemical sample analysis across this work package.

Transect monitoring wells using pilot TEM data; core sediments for fluoride adsorption experiments

Groundwater–surface water exchange models using MODFLOW6 and PEST calibration tools

PHREEQC-3 speciation and surface complexation modelling to isolate fluoride release mechanisms

2D reactive transport models integrating flow and geochemistry as interconnected objects

WP3 · Climate Futures · GEUS Lead · 2025–2029

Predicting Net Effects of Climate Change

Translating IPCC climate scenarios into groundwater quality forecasts

Uses WP1 and WP2 models to forecast how future climate change, land use shifts, and population growth will affect groundwater — providing the decision-making foundation for climate-resilient resource management.

CMIP6 climate scenario identification and future groundwater demand estimation

3D conceptual hydrological baseline model of the Lodwar area from geological and field data

Worst-to-best IPCC projections across 1D and 2D reactive transport models

Net impact quantification of climate change versus other stressors using baseline uncertainty comparison

WP4 · Socio-Economics · University of Nairobi Lead · 2026–2030

Socio-Economic Impacts & Water Equity

Bridging geoscience with human welfare, justice, and community resilience

Assesses how water quality and scarcity affect communities in Turkana County — examining gender-based access patterns, health perceptions, willingness-to-pay for clean water, and distributional consequences of water insecurity.

Household baseline surveys on water source access, time-use by gender, and seasonal variability

Community knowledge assessment: links between water quality, fluoride, salinity, and health

Choice experiments quantifying willingness-to-pay for treated potable water and welfare effects

Population density maps combined with WP1 outputs to estimate safe groundwater access

WP5 · Capacity Strengthening · RCGW Lead · 2025–2030

Capacity Strengthening & Knowledge Dissemination

RCGW leads this work package — coordinating training, stakeholder engagement, and community outreach

Ensures GEM's impact extends far beyond the research team. Three PhD students and one postdoctoral researcher trained under the project, alongside master's students at UoN, TUC, and UCPH.

Three PhD students and one postdoc co-supervised; research visits to Denmark for Kenyan researchers

Training courses for up to 20 participants, prioritising early career researchers across Kenya

Annual stakeholder meetings bridging scientists, county government, and Water Resources Authority

Community lectures at schools and villages in Turkana County; GEM portal on RCGW website

The Partnership

An interdisciplinary
international consortium

GEM unites research institutions, government bodies, and a newly established local university — combining world-leading expertise with irreplaceable indigenous knowledge of Turkana County.

GEUS
Lead Institution · Principal Investigator · 🇩🇰 Denmark
Geological Survey of Denmark & Greenland
GEUS — Copenhagen, Denmark
Principal Investigator — Senior Researcher in Geochemistry

Leads overall project management, WP1 and WP3. World-leading expertise in groundwater modelling with extensive international project experience across Europe, Africa and Asia. GEUS provides the scientific leadership and administrative backbone of GEM.
University of Copenhagen logo
Primary Partner · Denmark
University of Copenhagen
UCPH — IGN & IFRO Departments
🇩🇰 Denmark
Aarhus University logo
Primary Partner · Denmark
Aarhus University
AU — Department of Geoscience
🇩🇰 Denmark
University of Nairobi logo
Primary Partner · WP2 & WP4 Lead
University of Nairobi
UoN — Earth Sciences & Economics
🇰🇪 Kenya
Turkana University College logo
Primary Partner · Local Field Operations
Turkana University College
TUC — Lodwar, Turkana County
🇰🇪 Turkana
Water Resources Authority logo
Secondary Partner · Regulatory Body
Water Resources Authority
WRA — Nairobi, Kenya
🇰🇪 Kenya
RCGW logo
WP5 Lead · Secondary Partner
Regional Centre on Groundwater Resources
RCGW — Bishop Road, Nairobi
🇰🇪 Nairobi
Spotlight

RCGW's Role in GEM

The Regional Centre on Groundwater Resources plays a multi-faceted and distinctive role — from leading an entire work package to anchoring scientific laboratory capacity and community outreach across Turkana County.

WP5 Work Package Lead

Capacity Strengthening & Knowledge Dissemination

RCGW coordinates the project's entire capacity-building and outreach engine — from training the next generation of Kenyan groundwater researchers to educating communities across Turkana County.

  • Training courses of up to 20 participants, prioritising early career researchers and project partners across Kenya
  • Annual stakeholder group meetings creating a science-policy dialogue platform for government and communities
  • Community lectures at schools and villages in Turkana County, targeting children, youth, and marginalised groups
  • Facilitating South-South collaboration between Turkana University College and University of Nairobi
  • Hosting and maintaining the GEM project web portal on the RCGW website for open-access knowledge sharing

Chemical Sample Analysis

RCGW leads all chemical analysis of water samples — inorganic chemistry and stable isotopes — collected across field campaigns, following international QA/QC protocols. The data quality produced is foundational to all scientific conclusions across WP2.

Digital Knowledge Hub

RCGW hosts the GEM project web portal on its institutional website — serving as the publicly accessible repository for research outputs, training materials, and datasets, in line with FAIR data principles and open-access commitments.

Stakeholder Engagement

Co-organises stakeholder workshops in Nairobi and Lodwar, bridging scientists with county government water offices and the Water Resources Authority. RCGW's existing Turkana County network is invaluable for field activities and knowledge uptake.

Archive Data & Co-Supervision

Contributes essential archive data from Turkana County — geophysical surveys, borehole data, hydrogeochemical datasets from prior programmes — and co-supervises PhD and master students at partner institutions.

Expected Impact

Five outcomes that will
reshape water governance

Enhanced Groundwater Resource Management

Decision-makers gain probability maps of potable groundwater availability, enabling knowledge-informed protection and climate-resilient resource planning.

Baseline for Sustainable Aquifer Management

A rigorous scientific baseline for managing freshwater aquifers — informing abstraction rates, drilling locations, and quality protection measures.

Improved Groundwater Quality Resilience

Knowledge-informed decisions on abstraction and irrigation development protect aquifer quality against climate change amplification.

Reduced Inequity via Climate Action

Socio-economic analysis reveals distributional consequences, enabling targeted interventions to reduce burdens on women, children, and marginalised communities.

Increased Awareness & Research Capacity

A new generation of Kenyan researchers trained; communities informed; a lasting platform for South-South knowledge exchange established.

Contributing to the UN Sustainable Development Goals

SDG 1 · No Poverty SDG 2 · Zero Hunger SDG 3 · Good Health & Wellbeing SDG 4 · Quality Education SDG 5 · Gender Equality SDG 6 · Clean Water & Sanitation SDG 10 · Reduced Inequalities SDG 13 · Climate Action SDG 16 · Peace, Justice & Strong Institutions SDG 17 · Partnerships for the Goals
Project Timeline

Five years of
discovery & impact

Q1–Q2 2025
Project Launch
Consortium agreement signed. WP1, WP2, WP3 & WP5 initiated. Database compilation begins. Partnership formalised.
2025–2026
Field Campaign Phase 1
Regional groundwater sampling at ~150 points. Geophysical TEM surveys. Multi-level well transects established. WP4 baseline data collection begins Q1 2026.
2026–2027
Analysis & Modelling
RCGW leads chemical analysis of all samples. Machine learning modelling of environmental factors. Laboratory sediment experiments. Exchange models developed.
Mid-2027
Midterm Evaluation
Consortium reviews progress. Kenyan PhD students and postdoc undertake research stays in Denmark. First publications submitted.
2027–2029
Predictive Modelling
IPCC-scenario climate predictions. 2D reactive transport models for fluoride and salinity futures. Socio-economic willingness-to-pay analysis completed.
2029–2030
Dissemination & Close
Final publications, policy briefs, and webinars. Stakeholder workshop presenting results to decision-makers. PhD theses defended. Final report Q2 2030.
Connect

Reach the
GEM consortium

Lead Institution · WP1, WP3 & Project Management
Geological Survey of Denmark & Greenland
GEUS — Copenhagen, Denmark
gem@geus.dk 🇩🇰 Denmark
WP5 Lead · Capacity, Training & Web Portal
Regional Centre on Groundwater Resources
RCGW — Bishop Road, Nairobi
info@rcgw.go.ke 🇰🇪 Nairobi
Primary Partner · WP2 (Hydrogeology) & WP4 (Socio-Economics)
University of Nairobi
UoN — Earth Sciences & Economics Departments
research@uonbi.ac.ke 🇰🇪 Nairobi
Primary Partner · Local Field Operations
Turkana University College
TUC — Lodwar, Turkana County
info@tuc.ac.ke 🇰🇪 Turkana

About GEM & Open Access

GEM is a Danida Fellowship Centre funded research project (File No. DFC 25-08-GEUS), financed by the Danish Ministry of Foreign Affairs. Activities commenced 1 April 2025 and run through 31 December 2029.

The project is committed to open access publication of all research results. Data, outputs, and training materials will be freely available through the RCGW project web portal, in compliance with FAIR data principles and IP Rights policies.

GEM findings are directly applicable to arid regions across Africa and Asia. We welcome collaboration enquiries from researchers, NGOs, and government agencies working on water security.

Project Reference
File No. DFC 25-08-GEUS · April 2025 – December 2029
Funder: Danish Ministry of Foreign Affairs
Web Portal: RCGW, Nairobi
Research Partners & Institutions
University of Copenhagen
Aarhus University
University of Nairobi
Turkana University College
Water Resources Authority
RCGW